Josh Dillon, Last Revised January 2022
This notebook examines an individual antenna's performance over a whole season. This notebook parses information from each nightly rtp_summarynotebook (as saved to .csvs) and builds a table describing antenna performance. It also reproduces per-antenna plots from each auto_metrics notebook pertinent to the specific antenna.
import os
from IPython.display import display, HTML
display(HTML("<style>.container { width:100% !important; }</style>"))
# If you want to run this notebook locally, copy the output of the next cell into the next line of this cell.
# antenna = "004"
# csv_folder = '/lustre/aoc/projects/hera/H5C/H5C_Notebooks/_rtp_summary_'
# auto_metrics_folder = '/lustre/aoc/projects/hera/H5C/H5C_Notebooks/auto_metrics_inspect'
# os.environ["ANTENNA"] = antenna
# os.environ["CSV_FOLDER"] = csv_folder
# os.environ["AUTO_METRICS_FOLDER"] = auto_metrics_folder
# Use environment variables to figure out path to the csvs and auto_metrics
antenna = str(int(os.environ["ANTENNA"]))
csv_folder = os.environ["CSV_FOLDER"]
auto_metrics_folder = os.environ["AUTO_METRICS_FOLDER"]
print(f'antenna = "{antenna}"')
print(f'csv_folder = "{csv_folder}"')
print(f'auto_metrics_folder = "{auto_metrics_folder}"')
antenna = "135" csv_folder = "/home/obs/src/H6C_Notebooks/_rtp_summary_" auto_metrics_folder = "/home/obs/src/H6C_Notebooks/auto_metrics_inspect"
display(HTML(f'<h1 style=font-size:50px><u>Antenna {antenna} Report</u><p></p></h1>'))
import numpy as np
import pandas as pd
pd.set_option('display.max_rows', 1000)
import glob
import re
from hera_notebook_templates.utils import status_colors, Antenna
# load csvs and auto_metrics htmls in reverse chronological order
csvs = sorted(glob.glob(os.path.join(csv_folder, 'rtp_summary_table*.csv')))[::-1]
print(f'Found {len(csvs)} csvs in {csv_folder}')
auto_metric_htmls = sorted(glob.glob(auto_metrics_folder + '/auto_metrics_inspect_*.html'))[::-1]
print(f'Found {len(auto_metric_htmls)} auto_metrics notebooks in {auto_metrics_folder}')
Found 13 csvs in /home/obs/src/H6C_Notebooks/_rtp_summary_ Found 13 auto_metrics notebooks in /home/obs/src/H6C_Notebooks/auto_metrics_inspect
# Per-season options
mean_round_modz_cut = 4
dead_cut = 0.4
crossed_cut = 0.0
def jd_to_summary_url(jd):
return f'https://htmlpreview.github.io/?https://github.com/HERA-Team/H6C_Notebooks/blob/main/_rtp_summary_/rtp_summary_{jd}.html'
def jd_to_auto_metrics_url(jd):
return f'https://htmlpreview.github.io/?https://github.com/HERA-Team/H6C_Notebooks/blob/main/auto_metrics_inspect/auto_metrics_inspect_{jd}.html'
this_antenna = None
jds = []
# parse information about antennas and nodes
for csv in csvs:
df = pd.read_csv(csv)
for n in range(len(df)):
# Add this day to the antenna
row = df.loc[n]
if isinstance(row['Ant'], str) and '<a href' in row['Ant']:
antnum = int(row['Ant'].split('</a>')[0].split('>')[-1]) # it's a link, extract antnum
else:
antnum = int(row['Ant'])
if antnum != int(antenna):
continue
if np.issubdtype(type(row['Node']), np.integer):
row['Node'] = str(row['Node'])
if type(row['Node']) == str and row['Node'].isnumeric():
row['Node'] = 'N' + ('0' if len(row['Node']) == 1 else '') + row['Node']
if this_antenna is None:
this_antenna = Antenna(row['Ant'], row['Node'])
jd = [int(s) for s in re.split('_|\.', csv) if s.isdigit()][-1]
jds.append(jd)
this_antenna.add_day(jd, row)
break
# build dataframe
to_show = {'JDs': [f'<a href="{jd_to_summary_url(jd)}" target="_blank">{jd}</a>' for jd in jds]}
to_show['A Priori Status'] = [this_antenna.statuses[jd] for jd in jds]
df = pd.DataFrame(to_show)
# create bar chart columns for flagging percentages:
bar_cols = {}
bar_cols['Auto Metrics Flags'] = [this_antenna.auto_flags[jd] for jd in jds]
bar_cols[f'Dead Fraction in Ant Metrics (Jee)'] = [this_antenna.dead_flags_Jee[jd] for jd in jds]
bar_cols[f'Dead Fraction in Ant Metrics (Jnn)'] = [this_antenna.dead_flags_Jnn[jd] for jd in jds]
bar_cols['Crossed Fraction in Ant Metrics'] = [this_antenna.crossed_flags[jd] for jd in jds]
bar_cols['Flag Fraction Before Redcal'] = [this_antenna.flags_before_redcal[jd] for jd in jds]
bar_cols['Flagged By Redcal chi^2 Fraction'] = [this_antenna.redcal_flags[jd] for jd in jds]
for col in bar_cols:
df[col] = bar_cols[col]
z_score_cols = {}
z_score_cols['ee Shape Modified Z-Score'] = [this_antenna.ee_shape_zs[jd] for jd in jds]
z_score_cols['nn Shape Modified Z-Score'] = [this_antenna.nn_shape_zs[jd] for jd in jds]
z_score_cols['ee Power Modified Z-Score'] = [this_antenna.ee_power_zs[jd] for jd in jds]
z_score_cols['nn Power Modified Z-Score'] = [this_antenna.nn_power_zs[jd] for jd in jds]
z_score_cols['ee Temporal Variability Modified Z-Score'] = [this_antenna.ee_temp_var_zs[jd] for jd in jds]
z_score_cols['nn Temporal Variability Modified Z-Score'] = [this_antenna.nn_temp_var_zs[jd] for jd in jds]
z_score_cols['ee Temporal Discontinuties Modified Z-Score'] = [this_antenna.ee_temp_discon_zs[jd] for jd in jds]
z_score_cols['nn Temporal Discontinuties Modified Z-Score'] = [this_antenna.nn_temp_discon_zs[jd] for jd in jds]
for col in z_score_cols:
df[col] = z_score_cols[col]
ant_metrics_cols = {}
ant_metrics_cols['Average Dead Ant Metric (Jee)'] = [this_antenna.Jee_dead_metrics[jd] for jd in jds]
ant_metrics_cols['Average Dead Ant Metric (Jnn)'] = [this_antenna.Jnn_dead_metrics[jd] for jd in jds]
ant_metrics_cols['Average Crossed Ant Metric'] = [this_antenna.crossed_metrics[jd] for jd in jds]
for col in ant_metrics_cols:
df[col] = ant_metrics_cols[col]
redcal_cols = {}
redcal_cols['Median chi^2 Per Antenna (Jee)'] = [this_antenna.Jee_chisqs[jd] for jd in jds]
redcal_cols['Median chi^2 Per Antenna (Jnn)'] = [this_antenna.Jnn_chisqs[jd] for jd in jds]
for col in redcal_cols:
df[col] = redcal_cols[col]
# style dataframe
table = df.style.hide_index()\
.applymap(lambda val: f'background-color: {status_colors[val]}' if val in status_colors else '', subset=['A Priori Status']) \
.background_gradient(cmap='viridis', vmax=mean_round_modz_cut * 3, vmin=0, axis=None, subset=list(z_score_cols.keys())) \
.background_gradient(cmap='bwr_r', vmin=dead_cut-.25, vmax=dead_cut+.25, axis=0, subset=list([col for col in ant_metrics_cols if 'dead' in col.lower()])) \
.background_gradient(cmap='bwr_r', vmin=crossed_cut-.25, vmax=crossed_cut+.25, axis=0, subset=list([col for col in ant_metrics_cols if 'crossed' in col.lower()])) \
.background_gradient(cmap='plasma', vmax=4, vmin=1, axis=None, subset=list(redcal_cols.keys())) \
.applymap(lambda val: 'font-weight: bold' if val < dead_cut else '', subset=list([col for col in ant_metrics_cols if 'dead' in col.lower()])) \
.applymap(lambda val: 'font-weight: bold' if val < crossed_cut else '', subset=list([col for col in ant_metrics_cols if 'crossed' in col.lower()])) \
.applymap(lambda val: 'font-weight: bold' if val > mean_round_modz_cut else '', subset=list(z_score_cols.keys())) \
.applymap(lambda val: 'color: red' if val > mean_round_modz_cut else '', subset=list(z_score_cols.keys())) \
.bar(subset=list(bar_cols.keys()), vmin=0, vmax=1) \
.format({col: '{:,.4f}'.format for col in z_score_cols}) \
.format({col: '{:,.4f}'.format for col in ant_metrics_cols}) \
.format('{:,.2%}', na_rep='-', subset=list(bar_cols.keys())) \
.set_table_styles([dict(selector="th",props=[('max-width', f'70pt')])])
This table reproduces each night's row for this antenna from the RTP Summary notebooks. For more info on the columns, see those notebooks, linked in the JD column.
display(HTML(f'<h2>Antenna {antenna}, Node {this_antenna.node}:</h2>'))
HTML(table.render(render_links=True, escape=False))
| JDs | A Priori Status | Auto Metrics Flags | Dead Fraction in Ant Metrics (Jee) | Dead Fraction in Ant Metrics (Jnn) | Crossed Fraction in Ant Metrics | Flag Fraction Before Redcal | Flagged By Redcal chi^2 Fraction | ee Shape Modified Z-Score | nn Shape Modified Z-Score | ee Power Modified Z-Score | nn Power Modified Z-Score | ee Temporal Variability Modified Z-Score | nn Temporal Variability Modified Z-Score | ee Temporal Discontinuties Modified Z-Score | nn Temporal Discontinuties Modified Z-Score | Average Dead Ant Metric (Jee) | Average Dead Ant Metric (Jnn) | Average Crossed Ant Metric | Median chi^2 Per Antenna (Jee) | Median chi^2 Per Antenna (Jnn) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2459988 | RF_maintenance | 100.00% | 0.00% | 0.00% | 0.00% | - | - | 2.260552 | -1.418989 | -0.908610 | -1.371774 | 2.625742 | 0.408717 | 7.965072 | -0.485969 | 0.5658 | 0.5999 | 0.3984 | nan | nan |
| 2459987 | RF_maintenance | 0.00% | 0.00% | 0.00% | 0.00% | - | - | 2.629717 | -1.099812 | -0.994783 | -1.412514 | 3.113228 | 0.681541 | 1.096252 | -0.002427 | 0.5810 | 0.6101 | 0.3967 | nan | nan |
| 2459986 | RF_maintenance | 100.00% | 0.00% | 0.00% | 0.00% | - | - | 1.245734 | -1.177707 | -1.174966 | -1.431366 | 2.478889 | 0.646596 | 6.640441 | -1.469016 | 0.5937 | 0.6282 | 0.3545 | nan | nan |
| 2459985 | RF_maintenance | 100.00% | 0.00% | 0.00% | 0.00% | - | - | -0.757187 | -1.178792 | -1.046888 | -1.431926 | 1.566667 | 0.489158 | 14.912489 | -0.162475 | 0.5839 | 0.6086 | 0.4012 | nan | nan |
| 2459984 | RF_maintenance | 100.00% | 0.00% | 0.00% | 0.00% | - | - | -0.451681 | -0.580964 | -1.299288 | 0.518610 | 3.246230 | 48.665972 | 2.190451 | 4.934166 | 0.5970 | 0.6172 | 0.3768 | nan | nan |
| 2459983 | RF_maintenance | 100.00% | 0.00% | 0.00% | 0.00% | - | - | 1.533041 | -1.259115 | -1.001289 | -1.311821 | 1.906465 | 0.311379 | 5.023170 | -0.273584 | 0.5982 | 0.6451 | 0.3384 | nan | nan |
| 2459982 | RF_maintenance | 0.00% | 0.00% | 0.00% | 0.00% | - | - | -1.227509 | -1.028520 | -0.596780 | -1.078929 | 1.231328 | 0.687195 | 0.366857 | -0.542414 | 0.6419 | 0.6695 | 0.3124 | nan | nan |
| 2459981 | RF_maintenance | 100.00% | 0.00% | 0.00% | 0.00% | - | - | 3.440074 | -1.204842 | -0.993505 | -1.413006 | 2.393992 | 0.323389 | 11.718334 | 0.104661 | 0.5683 | 0.6058 | 0.4014 | nan | nan |
| 2459980 | RF_maintenance | 0.00% | 0.00% | 0.00% | 0.00% | - | - | 1.482736 | -1.180375 | -0.932650 | -1.578935 | 1.895058 | 0.550775 | 0.058269 | -1.076581 | 0.6093 | 0.6413 | 0.3375 | nan | nan |
| 2459979 | RF_maintenance | 100.00% | 0.00% | 0.00% | 0.00% | - | - | 0.082462 | -1.054120 | -0.987747 | -1.506493 | 2.169215 | 0.913250 | 4.469243 | -0.522142 | 0.5675 | 0.6053 | 0.4061 | nan | nan |
| 2459978 | RF_maintenance | 100.00% | 0.00% | 0.00% | 0.00% | - | - | 0.729258 | -1.185517 | -1.094764 | -1.561113 | 2.178227 | 0.511451 | 10.812921 | -0.061251 | 0.5638 | 0.6019 | 0.4112 | nan | nan |
| 2459977 | RF_maintenance | 100.00% | 0.00% | 0.00% | 0.00% | - | - | -0.182125 | -1.067381 | -1.040495 | -1.524275 | 5.438349 | 0.315005 | 7.221024 | 0.078092 | 0.5284 | 0.5644 | 0.3692 | nan | nan |
| 2459976 | RF_maintenance | 100.00% | 0.00% | 0.00% | 0.00% | - | - | 0.381145 | -1.107251 | -1.055929 | -1.611053 | 1.874793 | 1.006744 | 10.249325 | -0.314428 | 0.5741 | 0.6101 | 0.4039 | nan | nan |
auto_metrics notebooks.¶htmls_to_display = []
for am_html in auto_metric_htmls:
html_to_display = ''
# read html into a list of lines
with open(am_html) as f:
lines = f.readlines()
# find section with this antenna's metric plots and add to html_to_display
jd = [int(s) for s in re.split('_|\.', am_html) if s.isdigit()][-1]
try:
section_start_line = lines.index(f'<h2>Antenna {antenna}: {jd}</h2>\n')
except ValueError:
continue
html_to_display += lines[section_start_line].replace(str(jd), f'<a href="{jd_to_auto_metrics_url(jd)}" target="_blank">{jd}</a>')
for line in lines[section_start_line + 1:]:
html_to_display += line
if '<hr' in line:
htmls_to_display.append(html_to_display)
break
These figures are reproduced from auto_metrics notebooks. For more info on the specific plots and metrics, see those notebooks (linked at the JD). The most recent 100 days (at most) are shown.
for i, html_to_display in enumerate(htmls_to_display):
if i == 100:
break
display(HTML(html_to_display))
| Ant | Node | A Priori Status | Worst Metric | Worst Modified Z-Score | nn Shape Modified Z-Score | ee Shape Modified Z-Score | nn Power Modified Z-Score | ee Power Modified Z-Score | nn Temporal Variability Modified Z-Score | ee Temporal Variability Modified Z-Score | nn Temporal Discontinuties Modified Z-Score | ee Temporal Discontinuties Modified Z-Score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135 | N12 | RF_maintenance | ee Temporal Discontinuties | 7.965072 | -1.418989 | 2.260552 | -1.371774 | -0.908610 | 0.408717 | 2.625742 | -0.485969 | 7.965072 |
| Ant | Node | A Priori Status | Worst Metric | Worst Modified Z-Score | ee Shape Modified Z-Score | nn Shape Modified Z-Score | ee Power Modified Z-Score | nn Power Modified Z-Score | ee Temporal Variability Modified Z-Score | nn Temporal Variability Modified Z-Score | ee Temporal Discontinuties Modified Z-Score | nn Temporal Discontinuties Modified Z-Score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135 | N12 | RF_maintenance | ee Temporal Variability | 3.113228 | 2.629717 | -1.099812 | -0.994783 | -1.412514 | 3.113228 | 0.681541 | 1.096252 | -0.002427 |
| Ant | Node | A Priori Status | Worst Metric | Worst Modified Z-Score | nn Shape Modified Z-Score | ee Shape Modified Z-Score | nn Power Modified Z-Score | ee Power Modified Z-Score | nn Temporal Variability Modified Z-Score | ee Temporal Variability Modified Z-Score | nn Temporal Discontinuties Modified Z-Score | ee Temporal Discontinuties Modified Z-Score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135 | N12 | RF_maintenance | ee Temporal Discontinuties | 6.640441 | -1.177707 | 1.245734 | -1.431366 | -1.174966 | 0.646596 | 2.478889 | -1.469016 | 6.640441 |
| Ant | Node | A Priori Status | Worst Metric | Worst Modified Z-Score | nn Shape Modified Z-Score | ee Shape Modified Z-Score | nn Power Modified Z-Score | ee Power Modified Z-Score | nn Temporal Variability Modified Z-Score | ee Temporal Variability Modified Z-Score | nn Temporal Discontinuties Modified Z-Score | ee Temporal Discontinuties Modified Z-Score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135 | N12 | RF_maintenance | ee Temporal Discontinuties | 14.912489 | -1.178792 | -0.757187 | -1.431926 | -1.046888 | 0.489158 | 1.566667 | -0.162475 | 14.912489 |
| Ant | Node | A Priori Status | Worst Metric | Worst Modified Z-Score | ee Shape Modified Z-Score | nn Shape Modified Z-Score | ee Power Modified Z-Score | nn Power Modified Z-Score | ee Temporal Variability Modified Z-Score | nn Temporal Variability Modified Z-Score | ee Temporal Discontinuties Modified Z-Score | nn Temporal Discontinuties Modified Z-Score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135 | N12 | RF_maintenance | nn Temporal Variability | 48.665972 | -0.451681 | -0.580964 | -1.299288 | 0.518610 | 3.246230 | 48.665972 | 2.190451 | 4.934166 |
| Ant | Node | A Priori Status | Worst Metric | Worst Modified Z-Score | ee Shape Modified Z-Score | nn Shape Modified Z-Score | ee Power Modified Z-Score | nn Power Modified Z-Score | ee Temporal Variability Modified Z-Score | nn Temporal Variability Modified Z-Score | ee Temporal Discontinuties Modified Z-Score | nn Temporal Discontinuties Modified Z-Score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135 | N12 | RF_maintenance | ee Temporal Discontinuties | 5.023170 | 1.533041 | -1.259115 | -1.001289 | -1.311821 | 1.906465 | 0.311379 | 5.023170 | -0.273584 |
| Ant | Node | A Priori Status | Worst Metric | Worst Modified Z-Score | ee Shape Modified Z-Score | nn Shape Modified Z-Score | ee Power Modified Z-Score | nn Power Modified Z-Score | ee Temporal Variability Modified Z-Score | nn Temporal Variability Modified Z-Score | ee Temporal Discontinuties Modified Z-Score | nn Temporal Discontinuties Modified Z-Score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135 | N12 | RF_maintenance | ee Temporal Variability | 1.231328 | -1.227509 | -1.028520 | -0.596780 | -1.078929 | 1.231328 | 0.687195 | 0.366857 | -0.542414 |
| Ant | Node | A Priori Status | Worst Metric | Worst Modified Z-Score | nn Shape Modified Z-Score | ee Shape Modified Z-Score | nn Power Modified Z-Score | ee Power Modified Z-Score | nn Temporal Variability Modified Z-Score | ee Temporal Variability Modified Z-Score | nn Temporal Discontinuties Modified Z-Score | ee Temporal Discontinuties Modified Z-Score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135 | N12 | RF_maintenance | ee Temporal Discontinuties | 11.718334 | -1.204842 | 3.440074 | -1.413006 | -0.993505 | 0.323389 | 2.393992 | 0.104661 | 11.718334 |
| Ant | Node | A Priori Status | Worst Metric | Worst Modified Z-Score | nn Shape Modified Z-Score | ee Shape Modified Z-Score | nn Power Modified Z-Score | ee Power Modified Z-Score | nn Temporal Variability Modified Z-Score | ee Temporal Variability Modified Z-Score | nn Temporal Discontinuties Modified Z-Score | ee Temporal Discontinuties Modified Z-Score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135 | N12 | RF_maintenance | ee Temporal Variability | 1.895058 | -1.180375 | 1.482736 | -1.578935 | -0.932650 | 0.550775 | 1.895058 | -1.076581 | 0.058269 |
| Ant | Node | A Priori Status | Worst Metric | Worst Modified Z-Score | ee Shape Modified Z-Score | nn Shape Modified Z-Score | ee Power Modified Z-Score | nn Power Modified Z-Score | ee Temporal Variability Modified Z-Score | nn Temporal Variability Modified Z-Score | ee Temporal Discontinuties Modified Z-Score | nn Temporal Discontinuties Modified Z-Score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135 | N12 | RF_maintenance | ee Temporal Discontinuties | 4.469243 | 0.082462 | -1.054120 | -0.987747 | -1.506493 | 2.169215 | 0.913250 | 4.469243 | -0.522142 |
| Ant | Node | A Priori Status | Worst Metric | Worst Modified Z-Score | nn Shape Modified Z-Score | ee Shape Modified Z-Score | nn Power Modified Z-Score | ee Power Modified Z-Score | nn Temporal Variability Modified Z-Score | ee Temporal Variability Modified Z-Score | nn Temporal Discontinuties Modified Z-Score | ee Temporal Discontinuties Modified Z-Score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135 | N12 | RF_maintenance | ee Temporal Discontinuties | 10.812921 | -1.185517 | 0.729258 | -1.561113 | -1.094764 | 0.511451 | 2.178227 | -0.061251 | 10.812921 |
| Ant | Node | A Priori Status | Worst Metric | Worst Modified Z-Score | ee Shape Modified Z-Score | nn Shape Modified Z-Score | ee Power Modified Z-Score | nn Power Modified Z-Score | ee Temporal Variability Modified Z-Score | nn Temporal Variability Modified Z-Score | ee Temporal Discontinuties Modified Z-Score | nn Temporal Discontinuties Modified Z-Score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135 | N12 | RF_maintenance | ee Temporal Discontinuties | 7.221024 | -0.182125 | -1.067381 | -1.040495 | -1.524275 | 5.438349 | 0.315005 | 7.221024 | 0.078092 |
| Ant | Node | A Priori Status | Worst Metric | Worst Modified Z-Score | nn Shape Modified Z-Score | ee Shape Modified Z-Score | nn Power Modified Z-Score | ee Power Modified Z-Score | nn Temporal Variability Modified Z-Score | ee Temporal Variability Modified Z-Score | nn Temporal Discontinuties Modified Z-Score | ee Temporal Discontinuties Modified Z-Score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135 | N12 | RF_maintenance | ee Temporal Discontinuties | 10.249325 | -1.107251 | 0.381145 | -1.611053 | -1.055929 | 1.006744 | 1.874793 | -0.314428 | 10.249325 |